生命是否起源于RNA世界?
Did Life Begin in an RNA World?

原始链接: https://www.quantamagazine.org/did-life-begin-in-an-rna-world-20261109/

生命起源仍然未知,但许多科学家关注自我复制。RNA世界假说认为,RNA既能储存遗传信息又能催化反应,从而避免DNA和蛋白质的“先有鸡还是先有蛋”问题。核酶支持这种可能性。早期理论设想随机核苷酸可形成能突变和进化的自我复制核酶。 然而,Gerald Joyce的实验表明,大型核酶常因突变而失去催化功能,而自发形成的RNA要小得多。Philipp Holliger的研究带来希望:一个名为QT45的45个核苷酸RNA能复制其他RNA,类似的小型自我复制分子可能在随机序列中相当常见。冷冻、解冻和酸度变化等环境循环可能推动复制。 不过,RNA世界是否存在于早期地球,以及仅RNA是否构成生命,仍不确定,因为生命还需要新陈代谢。RNA世界是合理的,但尚未被证明。

Hacker News 上关于 Quanta 文章的讨论问及生命是否起源于 RNA 世界。评论者争论 RNA 自我复制是否能自然产生。批评者认为实验室实验使用纯化单体而非混浊的前生命汤,且组合爆炸使长链复制子自发形成概率低。其他人则以自催化集合、环境选择、行星尺度和未知机制反驳。文中提到装配理论和约束的闭合。一位起源研究者指出,关键挑战是找到与原细胞兼容的准确 RNA 复制,并认为突变可能可用而非纯粹有害。一些人讨论泛种论、LUCA/FUCA、保守的 RNA 机制,以及进化是否需要生命。总体而言,RNA 世界仍然合理但未定论,机制上没有共识。
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原文

There’s scarcely any corner of Earth in which life hasn’t gained a foothold. Living organisms shape the clouds, the climate, even the rocks. But how life first appeared on a barren planet some 4 billion years ago remains one of the biggest questions for science. Many researchers believe that self-replication — an ability to reliably store and copy genetic information — is life’s most core ability. If that’s true, then the earliest life-forms would presumably have needed the sorts of biomolecules that life uses to store and copy genetic information today.

The DNA molecule is the star of this process; it encodes the forms of the protein molecules that enable chemical reactions in cells. To translate the genetic information in DNA into the chemical structure of proteins, cells use RNA. The trouble is, in modern cells, proteins are involved in every step of this process: They duplicate DNA when cells divide, they transcribe DNA into RNA, and they help to use RNA for making more proteins. This creates a chicken-and-egg problem: Useful proteins can’t be made in cells without DNA, but proteins are needed to make DNA in the first place.

A discovery about RNA in the late 1980s seemed to break the deadlock. Researchers found that, in addition to helping to convert genetic information into proteins, some RNAs can act as catalysts that enable chemical reactions. These were christened ribozymes, in reference to the protein catalysts called enzymes. The existence of ribozymes suggested that RNA can both carry genetic sequence information and act as a catalyst, thereby doing the jobs of both DNA and proteins. That makes it plausible that in its very earliest days, life — or the complex chemistry that preceded it — was all about RNA. According to this picture, championed by the physicist-turned-biologist Walter Gilbert, life began as an RNA world.

Imagine then that, somewhere on the prebiotic Earth, individual nucleotide molecules appeared and joined together spontaneously and randomly in chains. By chance one momentous day, one of these nucleotide chains acquired the right sequence to act as a ribozyme with the ability to help other RNAs form. Such a prebiotic ribozyme could even act as an autocatalyst, able to replicate itself. In 1996, this theory got a boost when researchers created a ribozyme that could indeed stitch individual nucleotides together to form RNA. This raised the prospect of RNA that could replicate.

Because such replication would be vulnerable to the random noise of the molecular world, errors would happen. Some replicated RNA would have a slightly different sequence from its parent. With such mutations, Darwinian evolution becomes possible: Natural selection would favor mutant replicators that make copies at a faster rate.

These primitive, evolving molecular systems wouldn’t be “alive” in themselves. It’s easy to imagine, however, how some RNA molecules could evolve into forms that catalyzed metabolic processes or made other complex biomolecules — and from there the path to the first truly living protocells comes into view.

The “RNA world,” as the idea was dubbed, sounds good in theory. But there are problems with the hypothesis. In 2019, the RNA biologist Gerald Joyce of the Salk Institute and his colleagues were exploring a method for making new ribozymes in the lab. They started by creating synthetic ribozymes that could make other RNAs. Then they scrambled the ribozymes’ sequences a bit to let them evolve artificially. Although they eventually found a ribozyme capable of synthesizing the RNA from which it had “evolved,” Joyce and colleagues found that the mutations introduced in each round of evolution tended to kill off the catalytic behavior. Very few mutants in each successive generation retained the ability to construct other RNA molecules at all. All told, the experiments suggest that self-sustaining RNA evolution appears to be hard.

What’s more, all of Joyce’s ribozymes were big, comprising perhaps several hundred or so linked nucleotides. However, current experiments have only yielded spontaneous assembly of RNAs that are relatively tiny — about 10 to 15 nucleotides long. It’s big jump to go from random assembly of small, fragmentary RNAs to an RNA world in which large molecules can form, much less replicate and evolve. The chance of functional molecules like these assembling at random and then sustaining themselves in some primordial pool seems minuscule.

But RNA-world true believers have some reason to maintain hope. Recent work from the biologist Philipp Holliger at the MRC Laboratory of Molecular Biology in the United Kingdom and his colleagues has shown that self-replicating RNAs don’t have to be as big as Joyce’s ribozymes. In their own RNA artificial evolution experiments, Holliger’s team looked for catalytic activity in small RNAs (between 20 and 40 nucleotides in length), allowing for small changes in length in each cycle of mutation. They found a 45-nucleotide molecule that they christened QT45 (“quite tiny”) that could seize another RNA strand and copy it. “In principle it can copy any sequence,” Holliger said. And getting a 45-nucleotide molecule spontaneously “does not seem an unreasonable ask,” he added. In fact, the researchers say, the catalytic activity might be sustained even if QT45 is split into two fragments, since the parts should remain able to do their jobs.

The researchers also found two other comparably small RNAs with similar activity within a starting pool of around 10 trillion different molecules. Given that this many molecules includes just a hundred-billionth of all the possible RNA sequences of this length, that’s actually a pretty good hit rate, Holliger said. It suggests that this sort of self-copying ability in small RNAs might be common enough that such molecules could have appeared quite readily among random RNAs in some kind of primordial soup.

That “could” is doing a lot of work. It’s not known whether there was a niche for an RNA world, either geographically or temporally, on the early Earth. Holliger and colleagues have shown that rounds of RNA replication leading to exponential growth can be driven by cyclic changes in acidity coupled with cycles of freezing and thawing of the solution — a plausible scenario at the icy poles of the young Earth. But any potential habitat would have to have been life-friendly for long enough for a spark of life to catch.

Perhaps most importantly, it’s not clear that an RNA world would be truly alive. Life isn’t just about self-replicating carriers of genetic information — it takes more ingredients, in particular the existence of some form of metabolism to harvest energy from the environment and use it to make useful molecules. However life started, it probably needed more than just a string of nucleotides.

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